100% do not use JB weld and defiantly use mechanical fasteners in all the holes! I personally use only Flat Socket Head bolts (allen head) and never screws unless I have no other choice. Ideally you want to have access below the gunnel and then use backer on the bottom side. In many cases you can get away with a high quality plywood such as a marine grade plywood or even Baltic Birch (I have used Baltic birch many times with great results as its MUCH stronger than normal plywood, has waterproof glue and once cut to size I spray it with breathable lacquer). The other options for backer is plastic such as HDPE. I personally do not use thin materials such as aluminum or even cutting board plastic as I believe having a good 3/4" of backer makes for a better installation. I also make the backer board as wide as possible and use silicone to glue the backer to the gunnel so the two pieces basically become one!
Its always best to do it once, and do it right!